This was also my first tube amp build (id been restoring them prior but wanted to do a complete build and im always broke so this fit the bill lol).
So first ill say you arent alone i had the same issue. Only thing is i built mine with an extra tube socket for a 6V6 biased to function as it would in a stock champ and put each power tube on a cathode lift switch so you can select on or the other at will. And in the 6V6 configuration its much better but can still get a bit wooley if turned all the way up with humbuckers but in a endearing way not a, man this is shit way. I also nixed the "turbo" mod which is just basically an overly complicated RAW mod. In this amp with its current design you already have way too much signal and as someone else said EL84's are much easier to drive by the previous stages so its easier to overdo it.
What i did for the volume push pull is make it a high/low input control which i really like especially since we already had to much signal, not too little, very novice design choice indeed (as glpg80 so eloquently put lol). Another thing i did is add back the NFB loop on a switch and thats were a lot of the excess is coming from i believe. Without that negative feedback taming things the amp gets out of control real quick then when you add an eq defeat (the "turbo" mod) things get real stupid real quick.
Last thing i did was to add a switch to the back panel that swaps the cathode bypass caps and resistors on each preamp tube to the Marshall values. That cuts a lot of the low end thats coming through and makes the gain character much tighter. This amp was designed supposedly by a guy that is no longer working at Amplified Parts/MOD kits, at least thats what they told me was the reason they couldnt answer my more technical queries. This kit was literally a matter of some guy finding mods and changing the circuit with no regard to how it would actually sound with those mods interacting with one another. He or she clearly didnt know what they were actually doing. But its really cheap and still worth it for the right person.
But i honestly, and i really mean it, love this amp now that ive got it playing nicer with itself. And as others have mentioned already there are much better ways of taming this circuits shortcomings than ive even tried so i would give them a go cause its completely possible to get this amp sounding fantastic. I also should mention i did some changes to get my voltages up a bit higher as well and it probably wasnt necessary but it makes me feel better since they are closer to an actual champs voltages and still within safe margins that havent negatively impacted tube life, if fact im running the plate dissipation on the lower side for a class A cathode biasd amp because it sounded just as good like that so i figured i might as well go easy on the tubes.
Anyways sorry for reviving a months old thread. Im on my 2nd amp build (a Bassman clone thats also starting its life as a kit build cause thats the only option i can afford despite being capable of sourcing my own parts and building from scratch lol) and in getting prepped for that build i ended up seeing this post and thought id share my experience with it.